Stereo-seq OMNI for FFPE Solution
Stereo-seq OMNI V1.1 is a revolutionary spatial transcriptomics solution designed to extract comprehensive single-cell RNA information from FFPE samples. Leveraging an innovative capturing probe design, it captures coding and non-coding RNA with unmatched accuracy and efficiency, even from low-quality samples (DV200 > 30%).
Covering continuous tissue areas of up to 10mm × 10mm, Stereo-seq OMNI V1.1 enables high-resolution mapping of gene expression at the true single-cell level while preserving spatial context for histological analysis. Species-agnostic and highly versatile, it empowers researchers to study complex tissue architecture, host-microbe interactions, and cellular heterogeneity with an end-to-end workflow from tissue preparation to actionable data. With Stereo-seq OMNI, labs can confidently explore the full spatial transcriptomic landscape of their FFPE samples.
Product Specification
| FFPE V1.1 Product Information | ||||
|---|---|---|---|---|
| Catalog Number | Set Name | Specifications | Version | Description |
| 211SN11004 | Stereo-seq OMNI Transcriptomics FFPE Set for Chip-on-a-slide (0.5cm × 0.5cm) V1.1 | 4 RXN | V1.1 | For generating a spatially-resolved total RNA library, available for Formalin-fixed and Paraffin-embedded (FFPE) biological tissue sections. |
| 211SN11114 | Stereo-seq OMNI Transcriptomics FFPE Set for Chip-on-a-slide (1cm × 1cm) V1.1 | 4 RXN | V1.1 | |
| 111KL11160 | Stereo-seq 16 Barcode Library Preparation Kit | 16 RXN | V1.1 | Designed for library preparation of samples using Stereo-seq technology, enables the addition of sample barcodes and library construction. |
| 301AUX001 | Stereo-seq PCR Adaptor | 2 EA | - | Compatible with PCR thermal cycler as a heating unit. |
Workflow
| Sample Preparation | Staining & Imaging | Permeabilization & In situ RNA Capturing | Library Construction & Sequencing | Data Analysis & Visualization |
|---|---|---|---|---|
| FFPE | ssDNA / H&E Staining | Stereo-seq OMNI Transcriptomics Set for FFPE | Stereo-seq Visualization Reagent Set PE75 | SAW & StereoMap |
Highlights
Deeper Insights Per Run
- Achieve 1–3× higher capture efficiency for richer RNA profiling, delivering deeper biological insights from every run.
Preserved Spatial Fidelity
- Enhanced tissue diffusion control maintains true single-cell resolution while supporting multiplexed sample analysis.
Improved Data Usability
- Experience up to 2× greater data usability, enabling faster, more efficient transformation of raw data into meaningful biological information.
True Single-Cell Profiling at Scale
- Gain precise spatial single-cell analysis for accurate tissue annotation and stratification across diverse sample types.
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